PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006678m
Common NameCICLE_v10006678mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 185aa    MW: 20882.8 Da    PI: 10.5342
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006678mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-051333323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     C +C+k+F + ++L +Hi tH
  Ciclev10006678m 13 CRICNKVFLSTHSLINHIETH 33
                     *******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.92E-5836No hitNo description
PROSITE profilePS501579.661138IPR007087Zinc finger, C2H2
PROSITE patternPS0002801333IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MPFPKTQQQQ IACRICNKVF LSTHSLINHI ETHMVNNETA AARRQNELIN QFATNPNFYN  60
NFTLQTPPPP TQPPIHSGRI AQEIIRNPFL FPNPQSLLNH QGPWPVPPTN LSRKNLVFGP  120
QLQPHSVFGQ QAVRIQQQLS SSSSDRFTKP LIDQLQKKIP AAERYGDGNN RVFGSEMLDL  180
TLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006420259.11e-133hypothetical protein CICLE_v10006678mg
TrEMBLV4U2N51e-133V4U2N5_9R
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2570923